PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G359700.1.p
Common NameSb02g038030, SORBIDRAFT_02g038030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 215aa    MW: 22164.3 Da    PI: 8.4099
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G359700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.6e-292103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA  r+ +Pv+Gavg++  ++
  Sobic.002G359700.1.p   2 SCNGCRVLRKGCSDACVLRPCLqgidgAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGLLGVGS 90 
                           6*********************9999888899********************************************************* PP

                DUF260  85 qqleqlkaelall 97 
                           +q +q+++e++l+
  Sobic.002G359700.1.p  91 WQTCQAAVETVLR 103
                           *******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4381107IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PCLQGIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR  60
PAVFQSLLYE AAGRTINPVS GAVGLLGVGS WQTCQAAVET VLRGGAIGPL PEFDVGRDTF  120
ALAARRAVGC STFSTAKRAP TTTRTNVGAP PPVPLPPEPS CDLGLWLSPG SPPAPGERRR  180
PATPSLNSEE SVTTTTTSGG ARGGREPELL NLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654390.0BT065439.1 Zea mays full-length cDNA clone ZM_BFb0156D21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460949.11e-152hypothetical protein SORBIDRAFT_02g038030
SwissprotQ9FN111e-65LBD37_ARATH; LOB domain-containing protein 37
TrEMBLC5XD461e-152C5XD46_SORBI; Putative uncharacterized protein Sb02g038030
STRINGSb02g038030.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-57LOB domain-containing protein 37